Welcome to TumorDecon’s documentation!

Getting Started:

• About TumorDecon
• Quickstart
  • Installation
  • Tutorial

Usage:

• Data Inputs
  • Reading in RNA Sequence Data
  • Reading in Signature Matrices and Gene Sets
  • Creating Custom Lists of Up/Down-Regulated Genes from Signature Matrix
• Signature Matrix Creation
  • batch_correct_datasets()
  • create_signature_matrix()
• Running Digital Cytometry
  • tumor_deconvolve()
  • Cibersort
  • DeconRNASeq
  • ssGSEA
  • SingScore
• Post-processing & Visualization
  • cell_frequency_boxplot()
  • cell_frequency_barchart()
  • pair_plot()
  • hierarchical_clustering()
  • combine_celltypes()

Indices and tables

• Index

• Module Index

• Search Page